issues
search
Teichlab
/
Pan_fetal_immune
Collection of scripts for analysis of pan fetal immune atlas
24
stars
6
forks
source link
Notes from first look at cell2location alphatesting
#39
Closed
emdann
closed
2 years ago
emdann
commented
2 years ago
Observations
what is that south aggreagate in thymus sample? B1/Cycling B rich, NK rich...
Spatial segregation between quiescent DN/DP and proliferative DN/DP in thymus? Factor 1 and 9 in n_fact10
Questions
How much does the scale of factors matters?
Next steps
Do stromal cell types by organs match more consistently to the organ?
What stromal/immune interactions can we pick up?
Best strategy for selecting NMF model? (total variance explained estimate?)
Observations
Questions
Next steps