Hi!
I have been working with TissueTag, and I've noticed that I lose my annotation progress for the data that I'm working on when I shut down my Jupyter server that runs the analysis script . However, following the code in the demo, I saved those annotations before closing:
(Example from Demo) Save annoations
isExist = os.path.exists(path+'tissue_annotations2')
if not(isExist):
os.mkdir(path+'/tissue_annotations/')
I was curious how to load these annotations back into the manual annotator for additional edits? Having a bit of trouble getting my annotations to load back in. Did I miss this is in the materials? Any help would be greatly appreciated! Thanks!
B
Hi! I have been working with TissueTag, and I've noticed that I lose my annotation progress for the data that I'm working on when I shut down my Jupyter server that runs the analysis script . However, following the code in the demo, I saved those annotations before closing:
(Example from Demo) Save annoations isExist = os.path.exists(path+'tissue_annotations2') if not(isExist): os.mkdir(path+'/tissue_annotations/')
tt.save_annotation( folder=path+'/tissue_annotations/', label_image=labels, file_name='annotations', anno_names=list(annodict.keys()), anno_colors=list(annodict.values()), ppm = ppm_anno ) print("done")
I was curious how to load these annotations back into the manual annotator for additional edits? Having a bit of trouble getting my annotations to load back in. Did I miss this is in the materials? Any help would be greatly appreciated! Thanks! B