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Teichlab / bbknn

Batch balanced KNN
MIT License
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incompatible with annoy==1.17.0 ? #44

Open zktuong opened 3 years ago

zktuong commented 3 years ago

I was trying to run bbknn (and also scrublet) and both independently kept crashing my sessions.

I think it's got to do with annoy==1.17.0 and simply downgrading to annoy==1.16.3 made everything run again.

ktpolanski commented 3 years ago

Yeah, annoy==1.17.0 does not seem to work well with both of the specified packages in the environments I've used it in. I have a faint recollection of getting it to work in some setting, but the details escape me.

Maybe I should specify this in the setup file, but the memory of it somehow working has me thinking it might be a local thing somehow?