how to extract single cell expression matrix

Teichlab / bin2cell

Join subcellular Visium HD bins into cells

MIT License

60 stars 2 forks source link

Closed dfgao closed 3 days ago

dfgao commented 3 days ago

NICE TOOL！

I have a question. After transferring the bin to the cell, does it support extracting an expression matrix for each cell for downstream analysis?

thx， dengfeng

ktpolanski commented 3 days ago

The cdata object at the end of the tutorial is a cell level count matrix.