Open antonkulaga opened 4 years ago
This may have to do with the IGDATA
environment variable being exported by a Dockerfile ENTRYPOINT
script:
https://github.com/Teichlab/bracer/blob/131c2b9a90cef87ea7afd7c47227852d822537a9/Dockerfile#L72
Try exporting IGDATA
prior to running bracer assemble
:
export IGDATA=/ncbi-igblast-1.4.0/bin && bracer assemble ...
When I ran the latest docker container on test fastq data it crashes with IgBLAST subprocess stdout.txt stderr.txt
Here is the command that was run: