i am trying to run bracer summarize with the ouput of bracer assemble (something i did several times for other projects). Within the folder filtered_BCR_seqs there are the BCR sequences and these are present for all my samples.
However when i try to infer the clonotype network running:
Traceback (most recent call last):
File "/site/ne/app/x86_64/bracer/bracer", line 21, in <module>
launch()
File "/site/ne/app/x86_64/bracer/bracerlib/launcher.py", line 43, in launch
Task().run()
File "/site/ne/app/x86_64/bracer/bracerlib/tasks.py", line 771, in run
self.loci, cells)
File "/site/ne/app/x86_64/bracer/bracerlib/tasks.py", line 1066, in write_reconstruction_statistics
pc = round((count/float(total_cells))*100, 1)
ZeroDivisionError: float division by zero
what could be the error? It seems someting related to the statistic, but my fasta files with the BCRs assembled within the filtered_BCR_seqs folders are not empy, they all have heavy or/and light chains..
Hello,
i am trying to run
bracer summarize
with the ouput ofbracer assemble
(something i did several times for other projects). Within the folderfiltered_BCR_seqs
there are the BCR sequences and these are present for all my samples.However when i try to infer the clonotype network running:
bracer summarise --config_file bracer.conf --use_unfiltered --graph_format jpeg --infer_lineage processed_files/
I have this error:
what could be the error? It seems someting related to the statistic, but my fasta files with the BCRs assembled within the
filtered_BCR_seqs
folders are not empy, they all have heavy or/and light chains..Any idea? Thanks!