mief
commented
4 years ago Hi, Many apologies for the late response, I hope you managed with this. The issue was that annotation_strategy and source are mandatory columns and shouldn't be empty.
Closed monkeyBai96 closed 4 years ago
mief
commented
4 years ago Hi, Many apologies for the late response, I hope you managed with this. The issue was that annotation_strategy and source are mandatory columns and shouldn't be empty.
hi, excellent work! I have worked on cellphonedb database v2.0.0 smoothly. But i have trouble in using my specific database. I make interaction_file.csv include "partner_a, partner_b", and NULL column "annotation_strategy" and "source". Fortunately it works by >cellphonedb database generate and merge my interaction with the original table. But when i use >method statistical_analysis --database out/cellphonedb_user_2020-05-21_15.db, cellphonedb only use the original interactions, skip over my interactions.
I check the /out/interaction_input.csv and find my "user_curated" interactions. Is there any problems with my command? Probability because the empty "annotation_strategy" and "source" columns of my_custom_interaction_file.csv.
Hope for any reply.