Teichlab / cellphonedb

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Is the calculated average expression comparable between separate runs of cellphonedb? #195

Closed rlorenzc closed 3 years ago

rlorenzc commented 4 years ago

For example I have two experimental conditions and I run these separately through cellphoneDB, will the average expression data that it generates separately for both conditions be comparable?

Thank you!

mief commented 3 years ago

Hi, No, since you have different cells in different conditions, the average expression will be different. Best, Mirjana