Teichlab / cellphonedb

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How to use cellphonedb to annotate genes with interactions? #207

Closed racng closed 3 years ago

racng commented 3 years ago

Is it possible to use cellphonedb as a python package in python scripts to query interactions without performing single cell specific analysis and without using the command line interface? Something like how we can search up gene names on the cellphonedb.org website to get the partner gene names and interaction ID?

mief commented 3 years ago

That hasn't been implemented yet, apologies. But it's a good idea and we'll see if we can included it future. For now, the best would be to download our input files from https://www.cellphonedb.org/downloads.