I want to know that if we need filter the gene first before running cellphoneDB? I have several datasets,but only 1 or 2 interaction-pairs were found after cellphonedb and heatmap plot between different cell, I only used the normalized data which's genes were not filtered from Seurat. I don't know why.
I want to know that if we need filter the gene first before running cellphoneDB? I have several datasets,but only 1 or 2 interaction-pairs were found after cellphonedb and heatmap plot between different cell, I only used the normalized data which's genes were not filtered from Seurat. I don't know why.