Teichlab / cellphonedb

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Do comparison using "celltype_origin" format in "meta.txt" file #243

Open MingwuDuan opened 3 years ago

MingwuDuan commented 3 years ago

Greetings, Similar to @bapoorva 's question, I have a merged (not integrated) dataset with 3 control and 3 treatment samples, and I want to do some comparison between those two groups. I run Seurat workflow, extract normalized data matrix from SeuratObject, modify the "cell_type" column to "celltype_origin" format in "meta.txt" file, e.g. mono_ctrl and mono_trt. Anything wrong?

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