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Teichlab / cellphonedb

MIT License
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Indexing issue #263

Closed amr15 closed 3 years ago

amr15 commented 3 years ago

Has anyone seen this issue on the final analysis step ? Do you know what might be causing it? There is no problem with my count or meta data file:

A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead

"ValueError: At based indexing on an integer index can only have integer indexers"

amr15 commented 3 years ago

Hi, I figured out --not all my cell types were annotated. I'd named undefined clusters as NA in the meta data file, which was in turn causing an issue in running the program.