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Teichlab / cellphonedb

MIT License
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Counts values are not decimal values. Incorrect file format ! #283

Closed Portulaca666 closed 3 years ago

Portulaca666 commented 3 years ago

image This is my format : image Who will help me ?

prete commented 3 years ago

Hi @wuzhigui for what I see, you're using sed -i 's/,/\t/g' CC_EC_assaymatrix.csv before running cellphonedb. That changes the file from a CSV (which uses , for delimiter) to a TSV (which uses or \t — tab), if you want cellphonedb to pick that up, you probably need to change the file extension to .tsv.

Could you try renaming CC_EC_assaymatrix.csv to CC_EC_assaymatrix.tsv and trying again?

Portulaca666 commented 3 years ago

thanks !

---Original--- From: @.> Date: Tue, Mar 9, 2021 21:37 PM To: @.>; Cc: @.**@.>; Subject: Re: [Teichlab/cellphonedb] Counts values are not decimal values. Incorrect file format ! (#283)

Hi @wuzhigui for what I see, you're using sed -i 's/,/\t/g' CC_EC_assaymatrix.csv before running cellphonedb. That changes the file from a CSV (which uses , for delimiter) to a TSV (which uses or \t — tab), if you want cellphonedb to pick that up, you probably need to change the file extension to .tsv.

Could you try renaming CC_EC_assaymatrix.csv to CC_EC_assaymatrix.tsv and trying again?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or unsubscribe.

---Original--- From: @.> Date: Tue, Mar 9, 2021 21:37 PM To: @.>; Cc: @.**@.>; Subject: Re: [Teichlab/cellphonedb] Counts values are not decimal values. Incorrect file format ! (#283)

Hi @wuzhigui for what I see, you're using sed -i 's/,/\t/g' CC_EC_assaymatrix.csv before running cellphonedb. That changes the file from a CSV (which uses , for delimiter) to a TSV (which uses or \t — tab), if you want cellphonedb to pick that up, you probably need to change the file extension to .tsv.

Could you try renaming CC_EC_assaymatrix.csv to CC_EC_assaymatrix.tsv and trying again?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or unsubscribe.