Error when generating dot plots with cellphone DB

Teichlab / cellphonedb

MIT License

342 stars 105 forks source link

Error when generating dot plots with cellphone DB #291

Closed aliciahillturner closed 3 years ago

aliciahillturner commented 3 years ago

Hi there! I am having trouble generating dot plots in cellphonedb on my LINUXOS! I have ensured I properly installed Python, activated my environment using conda, downloaded the sample data provided and also downloaded the required R package ggplot2 (which says it is installed). However, I keep getting this error and the plot won't generate.

Any help is greatly appreciated!

prete commented 3 years ago

Hi @aliciahillturner, I can't say I know what caused that "Error in continuous_scale". How did you created your environment? Could you try using the method described in this comment on #289 to create a clean conda environment?

_(Note: if you already had one conda environment named cpdb I'd suggest you remove it first with conda remove -n cpdb --all --yes)

aliciahillturner commented 3 years ago

Thank you so much! Yes the other method you linked worked!!