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Teichlab / cellphonedb

MIT License
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Invalid Counts data #344

Open nobie666 opened 3 years ago

nobie666 commented 3 years ago

Hello, I have caught a problem when running the statistical method: Invalid Counts data using the reference data--test_counts.txt and test_meta.txt. Could you help me solve the problem? Thank you so much! image

prete commented 3 years ago

Hi @nobie666 thank you for using CellPhoneDB. Looks like you've got the order of the arguments wrong. You need to provide the meta first and then counts second like this:

cellphonedb method statistical_analysis test_meta.txt test_counts.txt