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Teichlab / cellphonedb

MIT License
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error : ValueError: Columns must be same length as key #373

Closed jinyuanchun closed 2 years ago

jinyuanchun commented 2 years ago

i use statistical_analysis method cmd : cellphonedb method statistical_analysis Chondrocyte-Erythrocyte.0.meta.tsv Chondrocyte-Erythrocyte.0.matrix.tsv --counts-data=gene_name --output-path=out1 inport data Chondrocyte-Erythrocyte.0.meta.tsv image Chondrocyte-Erythrocyte.0.matrix.tsv

but the error image

jinyuanchun commented 2 years ago

supplement image

colin-leeyc commented 2 years ago

Same issue! Uninstalled and re-installed cellphonedb, and it worked..

ShiweiHePH commented 2 years ago

Same issue! Uninstalled and re-installed cellphonedb, and it worked..

That's true, I also address this issue via uninstalled and re-installed.

jinyuanchun commented 2 years ago

me too, re-install is ok

prete commented 2 years ago

Hi @jinyuanchun glad to hear it's sorted. This is probably caused by a dependency issue. Something else may have been installed in the same environment and you possibly got a different version of pandas than the one required by CellPhoneDB.

Closing this issue now as re-installing seems to be the way of fixing this.

jinyuanchun commented 2 years ago

thank you

---- Replied Message ---- | From | Shiwei @.> | | Date | 06/02/2022 22:17 | | To | @.> | | Cc | @.**@.> | | Subject | Re: [Teichlab/cellphonedb] error : ValueError: Columns must be same length as key (Issue #373) |

Same issue! Uninstalled and re-installed cellphonedb, and it worked..

That's true, I also address this issue via uninstalled and re-installed.

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