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Teichlab / celltypist

A tool for semi-automatic cell type classification
https://www.celltypist.org/
MIT License
304 stars 45 forks source link

the question about conf_score #102

Closed noob000007 closed 7 months ago

noob000007 commented 12 months ago

"Like this, I have completed clustering myself and annotated cell types for the clustering results. Now, I am using celltypist to automate type annotation based on my clustering. I have obtained the following results. So, what does 'conf_score' represent? Does the probability of 0.216800 suggest it's the 'predicted_labels', or is it 'majority_voting'?" 2023-12-02 140526

noob000007 commented 12 months ago

I've verified that the findings are predicted_labels and hope to be able to give confidence for each cluster in the future

ChuanXu1 commented 11 months ago

@Xyihang, there is no probability output for each cluster; but you can check the average probability and frequency of predicted cell types within a given cluster (e.g., use the celltypist.dotplot function).

ChuanXu1 commented 7 months ago

Will close the issue; please reopen it if you have further questions.