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Teichlab / celltypist

A tool for semi-automatic cell type classification
https://www.celltypist.org/
MIT License
301 stars 46 forks source link

is it available to generate model.pkl file from a marker gene list #109

Closed fnhe closed 8 months ago

fnhe commented 8 months ago

Hi celltypist, I was wondering if it's possible to generate my own pkl file based on a gene marker table?

Thanks

ChuanXu1 commented 8 months ago

@fnhe, it is not possible to generate models based on a marker table. Most machine learning tasks need a sample-feature space (matrix-like gene expression object in the single-cell case) to train on.