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Teichlab / celltypist

A tool for semi-automatic cell type classification
https://www.celltypist.org/
MIT License
301 stars 46 forks source link

Failure to install #133

Open tricityandrew opened 2 months ago

tricityandrew commented 2 months ago

I'm trying to install Celltypist.

I've tried the following: pip install celltypist

and conda install -c bioconda -c conda-forge celltypist

Neither are working. I've tried both in terminal and in a Jupyter notebook.

____ outputs:___ pip install celltypist

Collecting celltypist Obtaining dependency information for celltypist from https://files.pythonhosted.org/packages/d0/3a/98625ae40c1c839354d6bee4e389f23ecb9be94a42573f58f4ea4255e81c/celltypist-1.6.3-py3-none-any.whl.metadata WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: self-signed certificate in certificate chain (_ssl.c:1006)'))': /packages/d0/3a/98625ae40c1c839354d6bee4e389f23ecb9be94a42573f58f4ea4255e81c/celltypist-1.6.3-py3-none-any.whl.metadata WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: self-signed certificate in certificate chain (_ssl.c:1006)'))': /packages/d0/3a/98625ae40c1c839354d6bee4e389f23ecb9be94a42573f58f4ea4255e81c/celltypist-1.6.3-py3-none-any.whl.metadata WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: self-signed certificate in certificate chain (_ssl.c:1006)'))': /packages/d0/3a/98625ae40c1c839354d6bee4e389f23ecb9be94a42573f58f4ea4255e81c/celltypist-1.6.3-py3-none-any.whl.metadata WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: self-signed certificate in certificate chain (_ssl.c:1006)'))': /packages/d0/3a/98625ae40c1c839354d6bee4e389f23ecb9be94a42573f58f4ea4255e81c/celltypist-1.6.3-py3-none-any.whl.metadata WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: self-signed certificate in certificate chain (_ssl.c:1006)'))': /packages/d0/3a/98625ae40c1c839354d6bee4e389f23ecb9be94a42573f58f4ea4255e81c/celltypist-1.6.3-py3-none-any.whl.metadata ERROR: Could not install packages due to an OSError: HTTPSConnectionPool(host='files.pythonhosted.org', port=443): Max retries exceeded with url: /packages/d0/3a/98625ae40c1c839354d6bee4e389f23ecb9be94a42573f58f4ea4255e81c/celltypist-1.6.3-py3-none-any.whl.metadata (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: self-signed certificate in certificate chain (_ssl.c:1006)')))

ChuanXu1 commented 2 months ago

@tricityandrew, seems your SSL certificate cannot be verified. There are different reasons causing this - have you checked your system clock?