Teichlab / celltypist

A tool for semi-automatic cell type classification
https://www.celltypist.org/
MIT License
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why do fibroblast,endothelial,epithelial exit in immune_ALL_High_model? #139

Open echovv opened 1 week ago

echovv commented 1 week ago

Hi, Super helpful tools! Here is my question: When I annotate the human spleen dataset using the immune_ALL_High_model, I get the figure below. I noticed that a portion of the fibroblast cells remains unassigned. I'm wondering what could be the reason for this. I might think is the different property of fibroblast, so I checked the relevant scientific paper, but it doesn't mention any stromal cells. So, where do the trained fibroblasts originate from, and what is the tissue source in this case? image

Ziwei