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Teichlab / celltypist

A tool for semi-automatic cell type classification
https://www.celltypist.org/
MIT License
260 stars 40 forks source link

Train Custom Model on scATAC-seq data? #49

Closed jacklynnewsome closed 1 year ago

jacklynnewsome commented 1 year ago

Hello,

Is it at all possible to train a custom celltypist model on scATAC-seq data and then use it for predicting cell types in scATAC-seq datasets? I've been trying accomplish this, but so far it seems incompatible, despite my efforts.

ChuanXu1 commented 1 year ago

@jacklynnewsome, this should work if you provide the abundance matrix to CellTypist for training. You can detail the error here if it fails

ChuanXu1 commented 1 year ago

I will close this issue. Please re-open it if you still have problems dealing with this.