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Teichlab / celltypist

A tool for semi-automatic cell type classification
https://www.celltypist.org/
MIT License
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cuml training LogisticRegression. #80

Closed canergen closed 11 months ago

canergen commented 11 months ago

As discussed GPU training of LogisticRegression. Afterwards, the learned model is loaded in an sklearn classifier to be compatible with the rest of the code. For overclustering, following works (not implemented yet):

        flavor = 'rapids' if use_GPU else 'vtraag'
        method = 'rapids' if use_GPU else 'umap'
        sc.pp.neighbors(adata, n_neighbors=15, use_rep='X_pca', method=method)
        sc.tl.louvain(adata, resolution=25., key_added='over_clustering', flavor=flavor)