Open rahulbhadani opened 4 years ago
Hello, sorry for extremely late reply. But the functions do exist and are exported as you can see from https://github.com/ebi-gene-expression-group/scanpy-scripts/blob/nh3/scanpy_scripts/lib/__init__.py and https://github.com/ebi-gene-expression-group/scanpy-scripts/blob/nh3/scanpy_scripts/lib/_plot.py . If you installed by python setup.py install
, please check your installation location whether the installed code there are as expected. What's also worth checking is if the python called by your jupyter notebook is the expected one.
Okay, I will give it another try and let you know asap.
With reference to reproducing the output of the notebook: https://github.com/Teichlab/covid19_MS1/blob/master/reprocess_dataset/baron16.ipynb
I tried to install
https://github.com/ebi-gene-expression-group/scanpy-scripts/tree/nh3
and also tried by git cloning, switching to branch nh3 and and doingpython setup.py install
, but in both cases, executinggives error
and executing
gives
What's going on?