Open HumzaHemani opened 3 years ago
Yes, this has obviously been changed in an update to Trinity. You can either:
or
Cheers,
Mike
On 25 Sep 2020, at 21:46, HumzaHemani notifications@github.com wrote:
Hi,
Setting the trinity_kmer_length option in the config file leads to this error from trinity: ERROR, don't recognize parameter: --KMER_SIZE Based on this, I believe that --KMER_SIZE should be changed to --KMER_SIZE on line 1093 of tracer_func.py. When running Trinity standalone instead of Tracer, using --KMER_SIZE instead of --KMER_SIZE works.
Thank you!
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Hi,
Setting the trinity_kmer_length option in the config file leads to this error from trinity:
ERROR, don't recognize parameter: --KMER_SIZE
Based on this, I believe that--KMER_SIZE
should be changed to--__KMER_SIZE
on line 1093 of tracer_func.py. When running Trinity standalone instead of Tracer, using --__KMER_SIZE instead of --KMER_SIZE works.Thank you!