Closed mstubb closed 7 years ago
The build module should take sets of V and J (and C) sequences and make the appropriate resources.
build
Things to think about for the build module.
species ----> imgt_seqs | |---> synthetic_genomes | |---> igblast_dbs | |---> const_seqs | |---> invariant_cells
Tracer can then check that a particular species exists before loading the appropriate data.
The invariant_cells folder could contain sequences for any kind of invariant cell so that it could also deal with MAIT cells and anything else.
The
build
module should take sets of V and J (and C) sequences and make the appropriate resources.Things to think about for the
build
module.Tracer can then check that a particular species exists before loading the appropriate data.
The invariant_cells folder could contain sequences for any kind of invariant cell so that it could also deal with MAIT cells and anything else.