I was recently running tracer and looked through the repository and updated stuff. Let me know if you think any of this is useful for your repository!
What I changed:
Updated the docker file to more recent versions of packages
Combined the 2 configuration files into one
Combined and updated the 2 requirements.txt to latest versions of package (except biopython as that causes an error due to deprecation of bioalphabet, see here
Updated setup.py to use new requirements.txt
removed docker_wrapper.sh as not needed with updated Dockerfile
Moved gencode_parser.py to top level and removed docker_helper_files directory.
If this is not of help no worries and feel free to reject request!
Hi,
I was recently running tracer and looked through the repository and updated stuff. Let me know if you think any of this is useful for your repository!
What I changed: Updated the docker file to more recent versions of packages Combined the 2 configuration files into one Combined and updated the 2 requirements.txt to latest versions of package (except biopython as that causes an error due to deprecation of bioalphabet, see here Updated setup.py to use new requirements.txt removed docker_wrapper.sh as not needed with updated Dockerfile Moved gencode_parser.py to top level and removed docker_helper_files directory.
If this is not of help no worries and feel free to reject request!
Thanks, Simon