Hi,
Thanks for your effort for developing TraCer! It's very convenient for us to get the clonotypes.
Now I want to project my single cell full-length TCR to my 10X scRNA+TCR seq data. So I need to match them through the same TCR sequence. After reading your paper, I know that TraCer reported V genes & junction sequences & J genes. But 10X cellranger VDJ can report VDJ gens or CDR3 sequences.
I got the puzzle about how to use the output sequences of both softwares and match them. Could you give me some advice?
Thanks
Qin
Hi, Thanks for your effort for developing TraCer! It's very convenient for us to get the clonotypes. Now I want to project my single cell full-length TCR to my 10X scRNA+TCR seq data. So I need to match them through the same TCR sequence. After reading your paper, I know that TraCer reported V genes & junction sequences & J genes. But 10X cellranger VDJ can report VDJ gens or CDR3 sequences. I got the puzzle about how to use the output sequences of both softwares and match them. Could you give me some advice? Thanks Qin