Closed svalkiers closed 11 months ago
Hi! I'm currently facing the same issue. May i know how you solve it? cause i did customized the conf file to the correct path but yet can't solve it. Thanks!
I adjusted:
[tracer_location]
#Path to direcetory where TraCeR was originally downloaded
tracer_path = /home/sebastiaan/phd/tools/tracer/tracer
to
[tracer_location]
#Path to direcetory where TraCeR was originally downloaded
tracer_path = /home/sebastiaan/phd/tools/tracer
so the path refers to the tracer folder, not the executable.
Thanks alot!
By the way did you meeet this issues when you running test?
Hmm no I did not. The error does not look very informative. Did you prepare the reference transcriptomes as instructed in https://www.nxn.se/valent/2016/10/3/the-first-steps-in-rna-seq-expression-analysis-single-cell-and-other ?
Hmm no I did not. The error does not look very informative. Did you prepare the reference transcriptomes as instructed in https://www.nxn.se/valent/2016/10/3/the-first-steps-in-rna-seq-expression-analysis-single-cell-and-other ?
Yes i did! but the attributes part seems like changed a lil bit. My options like following:
Is it the same with you? because i didn't saw any similar issues posted here.
But i didn't do the genemap part, i just finish the references and indexing part. I guess it's fine right?
and also is this part refer to the directory? cause in my case after indexing the output is a directory.
Hi,
I followed the installation instructions as explained in the README, and edited the tracer.conf file accordingly. When I try to test the installation, I get an
AssertionError: Species not found in resources
error.Code:
Terminal output:
Please find the contents of the tracer.conf file here:
Thank you.