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Teichlab / tracer

TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
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resources_dir is determined incorrectly #51

Closed moskalenko closed 7 years ago

moskalenko commented 7 years ago

In tracer-0.5.1 the lib/python2.7/site-packages/tracer-0.5-py2.7.egg/tracerlib/tasks.py imports base_dir, which results in the base_dir being set to the lib/python2.7/site-packages/tracer-0.5-py2.7.egg directory and, as a result, the resources directory is not found when tracer assemble is run. We had to patch the lib/python2.7/site-packages/tracer-0.5-py2.7.egg/tracerlib/tasks.py script to take the base_dir location from an environment variable we set. However, that's just a workaround. A permanent fix still needs to be applied.

mstubb commented 7 years ago

This was fixed by pull request #52.

It is now possible to specify the location of the originally-downloaded resource files in the config file.