trivial fix (supplied!) for zinba_2.02.03.tar.gz - zinba() fails if no basecountfile supplied when refinepeaks=0

[GoogleCodeExporter]

1) What operating system are you using?
linux
2) What error message was displayed?
complaint that no basecountfile was supplied although refinepeaks=0
3) What was the exact command you used that resulted in the error?

4) Please copy and paste any additional screen output that resulted from
running the command

here's a diff that fixes the problem - works fine here

root@iaas1-int:/data/ext_src/zinba/R# diff run_zinba.R 
../../zinbaPatched/R/run_zinba.R 
46c46
<       if(is.null(basecountfile)) stop("path to read overlap file 
'basecountfile' must be specified")

---
>       if(is.null(basecountfile) && refinepeaks == 1) stop("path to read 
overlap file 'basecountfile' must be specified since refinepeaks <> 0")

Original issue reported on code.google.com by ross.laz...@gmail.com on 28 May 2012 at 6:47

[GoogleCodeExporter]

Thank you, will post the fix to this soon. 

Original comment by homer...@gmail.com on 28 May 2012 at 6:46

[GoogleCodeExporter]

we are currently incorporating these issues into a new zinba version, check 
back soon for a comprehensive update

Original comment by homer...@gmail.com on 20 Nov 2012 at 8:54

• Changed state: Verified