NO output file generated

[GoogleCodeExporter]

1) What operating system are you using?
    LinuxMint Release 11

2) What error message was displayed?
    No error. I am expecting there should be a "outfile.peaks" as the result, but there are only some ".wins", and ""offset*bp.txt" files.

3) What was the exact command you used that resulted in the error?
    run.zinba(
+   seq='data/H3K36me3_chr22.bed',  
+   input="data/CD4-IgG_removed.bed",
+   filetype="bed",
+   twoBit="hg18.2bit",
+   winSize=250,
+   offset=125,
+   extension=200,
+   basecountfile='data/H3K36me3_chr22.basecount',
+   align='align_athresh1_extension200/',
+   selectmodel=T,
+   selectchr = "chr22",
+   selecttype = "complete",
+   selectcovs = c("input_count"), 
+   interaction= T, 
+   threshold=0.05,
+   refinepeaks=1, 
+   numProc=2,
+   winGap=0,   
+   FDR=TRUE,
+   outfile="data/H3K36me3_chr22",
+   printFullOut=1,
+   method="mixture"
+ )

4) Please copy and paste any additional screen output that resulted from
running the command

Getting basecount data from data/H3K36me3_chr22.basecount
    Processing: fixedStep chrom=chr22 start=1 step=1
        Loading data for chr22
        Initializing length of 49691432
        Starting position in chromosome is 1

getSeqCountProfile COMPLETED SUCCESSFULLY
Begin Peak Refinement
Peak Refinement Complete

--------ZINBA COMPLETE-------- 2012-11-06 18:05:32 

See attachment for the whole log.

Original issue reported on code.google.com by ad...@zhengyiyu.com on 7 Nov 2012 at 2:52

[GoogleCodeExporter]

Problem solved. Sorry for the inconvenience.

Original comment by ad...@zhengyiyu.com on 8 Nov 2012 at 8:08

[GoogleCodeExporter]

we are currently incorporating these issues into a new zinba version, check 
back soon for a comprehensive update

Original comment by homer...@gmail.com on 20 Nov 2012 at 8:54

• Changed state: Verified