Running analysis on hg19 histone data

[GoogleCodeExporter]

I am trying to run zinba on histone data (w/ input) and it keeps core dumping.  
Can someone help?  what are the memory requirements for zinba?

1) What operating system are you using?
Linux x86_64 (high performance cluster)

2) What error message was displayed?
segmentation fault

3) What was the exact command you used that resulted in the error?
I created a r script for batch runs:

files <- commandArgs(trailingOnly=T)

mapdir <- files[1]
outdir <- files[2]
twoBitFile <- files[3]
chipfile <- files[4]
inputfile <- files[5]
alignability <- files[6]
zinba <- files[7]
basecount <- files[8]

generateAlignability(mapdir=mapdir,outdir=outdir,
                     athresh=1,extension=200,twoBitFile=twoBitFile)

basealigncount(inputfile=chipfile,outputfile=alignability,
               extension=200,filetype='bed',twoBitFile=twoBitFile)

zinba(refinepeaks=1,seq=chipfile,input=inputfile,filetype='bed',
      FDR=F,align=outdir,numProc=4,twoBit=twoBitFile,
      outfile=zinba,extension=200,
      interaction=F,broad=T,basecountfile=basecount)

4) Please copy and paste any additional screen output that resulted from
running the command

Original issue reported on code.google.com by will.l...@gmail.com on 5 Oct 2011 at 6:42

[GoogleCodeExporter]

Try installing the following version of zinba (planning to go public soon after 
some updates are made).  This should solve your problems on the cluster.

Original comment by homer...@gmail.com on 7 Oct 2011 at 3:45

Attachments:

• zinba_2.01.1.tar.gz

[GoogleCodeExporter]

Original comment by homer...@gmail.com on 10 Oct 2011 at 1:55

• Changed state: Done