We will work with the BioMADE community to develop a draft
standard for fermentation data taken at the manufacturing operating systems level. Datasets will be
represented in a structure that reveals the characteristics of individual data items and the relationships among
them. In addition, we will develop parser generation software that will auto-generate a parser that can accept
relatively unstructured fermentation data and convert to the standard.
libFSML: Open access tools library for reading, writing, and manipulating files
and data streams in FSML format. Written in Python with APIs for Javascript
and Python (Month 15) https://github.com/TeselaGen/fsml.org/milestone/3
Report on FSML development process, detailing both the process and
community organization procedures that are followed by the SBML community
(Month 18) https://github.com/TeselaGen/fsml.org/milestone/4
Test suite: Open access FSML test suite for conformance testing of FSML,
including a collection of test models and a framework for running software
through the suite (Month 21) https://github.com/TeselaGen/fsml.org/milestone/5
We will work with the BioMADE community to develop a draft standard for fermentation data taken at the manufacturing operating systems level. Datasets will be represented in a structure that reveals the characteristics of individual data items and the relationships among them. In addition, we will develop parser generation software that will auto-generate a parser that can accept relatively unstructured fermentation data and convert to the standard.
Deliverables