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TeselaGen / fsml.org

A BioMADE Collaboration Project
https://fsml.org
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Task 2: Open Source Data Exchange Standard #25

Open eabeliuk opened 2 years ago

eabeliuk commented 2 years ago

We will work with the BioMADE community to develop a draft standard for fermentation data taken at the manufacturing operating systems level. Datasets will be represented in a structure that reveals the characteristics of individual data items and the relationships among them. In addition, we will develop parser generation software that will auto-generate a parser that can accept relatively unstructured fermentation data and convert to the standard.

Deliverables

  1. Operational, publicly accessible community website (provisionally FSML.org)(Month 12) https://github.com/TeselaGen/fsml.org/milestone/1
  2. Complete specification of standard for data exchange of fermentation data, including syntax and semantics of FSML (Month 6 draft, Month 9 final) https://github.com/TeselaGen/fsml.org/milestone/2
  3. libFSML: Open access tools library for reading, writing, and manipulating files and data streams in FSML format. Written in Python with APIs for Javascript and Python (Month 15) https://github.com/TeselaGen/fsml.org/milestone/3
  4. Report on FSML development process, detailing both the process and community organization procedures that are followed by the SBML community (Month 18) https://github.com/TeselaGen/fsml.org/milestone/4
  5. Test suite: Open access FSML test suite for conformance testing of FSML, including a collection of test models and a framework for running software through the suite (Month 21) https://github.com/TeselaGen/fsml.org/milestone/5
  6. Demonstration of parser generation software that will auto-generate a parser that can accept unstructured fermentation data (Month 21) https://github.com/TeselaGen/fsml.org/milestone/6
eabeliuk commented 2 years ago

@tgadam , let's discuss about this ticket, because we'll need to work on a deliverable due on month 6.