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TeselaGen / openVectorEditor

DEPRECATED - Teselagen's Open Source Vector/Plasmid Editor Component
https://teselagen.github.io/tg-oss/ove/#/Editor
MIT License
200 stars 72 forks source link

Handle genome scale sequences #145

Open tnrich opened 6 years ago

tnrich commented 6 years ago
njhillson commented 6 years ago

Here is a link to an E. coli genome: https://www.ncbi.nlm.nih.gov/nuccore/NC_000913.3?report=genbank

tnrich commented 6 years ago

@mmatena can you please investigate how we might leverage our current code to handle genome scale sequences as well as different file types such as .bed, .bb, .bam/bai. Here is some example data from another open source genome browser: https://github.com/hammerlab/pileup.js/tree/master/test-data

If it seems like our editor is not amenable to it, see if we can customize either https://github.com/hammerlab/pileup.js/tree/master/test-data https://github.com/igvteam/igv.js to support whatever workflow our users might want to do.

@gmcarthuriv if you could weigh in with any thoughts as to what you'd like to see in regards to a genome browser that would also be awesome.

gmcarthuriv commented 6 years ago

Hi, @tnrich - I have some info in a LIMS ticket: https://github.com/TeselaGen/lims/issues/896

Please let me know if you'd like to chat about this feature sometime. I don't think it needs to be super fancy - just a way to view genome-scale GenBank files, including annotations of modifications/edits to engineered strains.