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TeselaGen / openVectorEditor

DEPRECATED - Teselagen's Open Source Vector/Plasmid Editor Component
https://teselagen.github.io/tg-oss/ove/#/Editor
MIT License
199 stars 72 forks source link

Support sanger / alignments #147

Closed tnrich closed 6 years ago

tnrich commented 6 years ago

@njhillson could you point me to an existing tool that supports sequence alignments and maybe describe the sort of functionality we'll want the editor to be able to support?

Thanks!

njhillson commented 6 years ago

ICE has this currently in sequence analysis tab. Uses BLAST to do pairwise alignment, parses results, renders arcs around circular plasmid or line above linear construct. colors green where good red where bad. Below visual is the actual DNA alignment. Check it out in JBEI public ICE. If you have questions, ask Hector Plahar. We can show it to you during DIVA developers meeting this afternoon.

On Mon, Oct 23, 2017 at 9:16 AM, Thomas Rich notifications@github.com wrote:

  • Support ability to do alignments

@njhillson https://github.com/njhillson could you point me to an existing tool that supports sequence alignments and maybe describe the sort of functionality we'll want the editor to be able to support?

Thanks!

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tnrich commented 6 years ago

Awesome thanks @njhillson !