Auto-translation and auto-calculation of AA sequences and their physical properties

[mfero]

From @mfero on February 23, 2018 0:36

From @gmcarthuriv on September 14, 2017 20:54

@craftjk, @rpavez - I described this feature in our recent call, but wanted to clearly describe it here.

Feature request description

• Upon importing GenBank or SBOL files, each annotated protein coding sequence (CDS) is automagically translated into the corresponding amino acid sequence (AAS).
• Each AAS is added to the AAS table (and given an appropriate name/ID based on a previously described template/scheme specified by the user/group), unless it already exists within the DB.
• A single AAS can have multiple CDSs encoding it. The ability to link back to all Sequences that contain CDSs from the AAS is extremely valuable.
• Each AAS is fed into a couple physical property calculators (e.g., MW, extinction coefficient) and the output is added to the AAS table as additional fields/columns.

Copied from original issue: TeselaGen/ve#4348

Copied from original issue: TeselaGen/lims#689

[mfero]

This is a VE issue.. I'll move it.

[tnrich]

@mfero is this supposed to be an OVE issue?