TeselaGen / openVectorEditor

DEPRECATED - Teselagen's Open Source Vector/Plasmid Editor Component
https://teselagen.github.io/tg-oss/ove/#/Editor
MIT License
200 stars 72 forks source link

Align to this work dons't work in latest branch #892

Closed devil12138 closed 1 year ago

devil12138 commented 1 year ago

my sequences:

a1.fasta

ATGAGCATCG

a2.fasta

ATGGTCAGCC

touch that buttom just loding and no result like: image

@tnrich

tnrich commented 1 year ago

Hi @devil12138 the alignments aren't actually set up to work on the demo page, they are just a placeholder. It requires having an actual server connected to OVE to get alignments to work.

I should probably add some note on the demo page to that effect.

Cheers!

devil12138 commented 1 year ago

@tnrich, thank you very much,.Actually I provide a sample server to return alignment result like demo/src/exampleData/pairwiseAlignment.json,but it missing something . So, how should I get the correct data structure that OVE wants. content of demo/src/exampleData/pairwiseAlignment.json is response of http://j5server.teselagen.com/alignment/run?

avisajn commented 1 year ago

@devil12138 @tnrich Did you solve it? Is the data of demo/src/exampleData/pairwiseAlignment.json the response of http://j5server.teselagen.com/alignment/run? Does this interface no longer provide a response? After you click Create Alignment, what kind of logic is executed? May I have a look? I have a problem now, thanks a lot

tnrich commented 1 year ago

@avisajn that URL is just a placeholder. The pairwiseAlignment.json file does indeed contain the json required to power the alignment visualization but it does not come from http://j5server.teselagen.com/alignment/run.

avisajn commented 1 year ago

@avisajn该 URL 只是一个占位符。pairwiseAlignment.json 文件确实包含支持对齐可视化所需的 json,但它并非来自 http://j5server.teselagen.com/alignment/run

What is the data structure of these three fields? Can you give me a case? I think there should be a document for the sequence alignment function here, because http://j5server.teselagen.com/alignment/run is no longer working, I need to work with the back-end development engineer to do this part of the work, we have encountered some obstacles now

image

hi-asan commented 1 year ago

@avisajn I also encountered this problem, did you solve it? I'm not sure what data format I should provide