The-Academic-Observatory / academic-observatory-workflows

Telescopes, Workflows and Data Services for the Academic Observatory
https://academic-observatory-workflows.readthedocs.io
Apache License 2.0
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INF-648: Add Pubmed to DOI table #182

Closed alexmassen-hane closed 10 months ago

alexmassen-hane commented 10 months ago

This PR adds the Pubmed table to the DOI table. The intermediate table for Pubmed selects the records that have a doi and that those that have the highest Version number for a given PMID.

codecov[bot] commented 10 months ago

Codecov Report

Patch coverage: 100.00% and project coverage change: -0.02% :warning:

Comparison is base (89327b4) 95.21% compared to head (45f940a) 95.20%.

:exclamation: Current head 45f940a differs from pull request most recent head 45a8ec0. Consider uploading reports for the commit 45a8ec0 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## develop #182 +/- ## =========================================== - Coverage 95.21% 95.20% -0.02% =========================================== Files 20 20 Lines 5201 5209 +8 Branches 719 720 +1 =========================================== + Hits 4952 4959 +7 Misses 161 161 - Partials 88 89 +1 ``` | [Files Changed](https://app.codecov.io/gh/The-Academic-Observatory/academic-observatory-workflows/pull/182?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=The-Academic-Observatory) | Coverage Δ | | |---|---|---| | [...ic\_observatory\_workflows/workflows/doi\_workflow.py](https://app.codecov.io/gh/The-Academic-Observatory/academic-observatory-workflows/pull/182?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=The-Academic-Observatory#diff-YWNhZGVtaWNfb2JzZXJ2YXRvcnlfd29ya2Zsb3dzL3dvcmtmbG93cy9kb2lfd29ya2Zsb3cucHk=) | `94.09% <ø> (ø)` | | | [academic\_observatory\_workflows/model.py](https://app.codecov.io/gh/The-Academic-Observatory/academic-observatory-workflows/pull/182?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=The-Academic-Observatory#diff-YWNhZGVtaWNfb2JzZXJ2YXRvcnlfd29ya2Zsb3dzL21vZGVsLnB5) | `97.63% <100.00%> (-0.14%)` | :arrow_down: |

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