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The-Bioinformatics-Group / Albiorix

Code used for configuration and administration of the bioinformatics computer cluster Albiorix at the Department of Biological and Environmental Sciences and Marine sciences, University of Gothenburg.
http://albiorix.bioenv.gu.se/
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Install Python module Bio #96

Closed jlblancopastor closed 7 years ago

jlblancopastor commented 7 years ago

http://biopython.org/

mtop commented 7 years ago

Hi @jlblancopastor. Which version of python are you using? The biopython module is installed in the default python installation

[mtop@albiorix ~]$ which python
/usr/local/packages/anaconda2/bin/python
jlblancopastor commented 7 years ago

HI @mtop. thanks for the reply I may be using the wrong python version

[jose@albiorix ~]$ which python /usr/local/bin/python

should I shange my .bashrc file?

.bashrc

Source global definitions

if [ -f /etc/bashrc ]; then . /etc/bashrc fi

Original PATH

export PATH=$PATH:$HOME/bin:$/usr/local/bin

User specific aliases and functions

export PATH=/state/partition1/home/local/ubin/baypass_2.1/sources:/usr/local/anaconda/bin:/usr/local/bin/jre1.8.0_31/bin:/usr/local/bin:/usr/bin:$PATH:$HOME/bin:/usr/local/ubin

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib export CFLAGS="-I/usr/local/include" export LDFLAGS="-L/usr/local/lib"

mtop commented 7 years ago

You can add module load at the end of the .bashrc file to solve this. Then run source ~/.bashrc. Cheers

jlblancopastor commented 7 years ago

Ok, thanks !