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The-Sequence-Ontology / SO-Ontologies

Collect of SO Ontologies
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polypeptide motifs [sf#111] #111

Closed srynobio closed 9 years ago

srynobio commented 9 years ago

Reported by eilbeck on 2008-07-31 23:02 UTC Copying an email from the PRO group at georgetown. Will update when they send me the list of motifs they need.

> On 7/31/08 1:47 PM, "Cecilia Arighi" wrote: > > Hi Karen, > > I wonder if SO is planing to include sequence motifs such as those > found in prosite, e.g Prenyl group binding site (CAAX box), PS00294 > <about://prosite/PS00294>, where C - {DENQ} - [LIVM] - x>, > phosporylation, glycosylation motif, etc. We need to have > definitions of > some of these motifs for PRO logical definitions, so in case SO (maybe > through biosapiens) take care of this, could I send a list of > motifs to > be included? > Thanks, > Ceci

srynobio commented 9 years ago

Commented by eilbeck on 2008-08-01 15:12 UTC Logged In: YES user_id=742851 Originator: YES

These are the motifs: GS-motif N-glycosylation site leucine zipper motif immunoreceptor tyrosine-based activation motif (ITAM) immunoglobulin domain cyclic nucleotide-binding domain (CNBD) SSxS motif TXY motif within protein kinase domain

srynobio commented 9 years ago

Commented by eilbeck on 2008-08-27 19:28 UTC Logged In: YES user_id=742851 Originator: YES

After discussion with Cecilia and Sandra, this item is being dropped. Prosite motifs would add 2000 terms and much redundent work.

srynobio commented 9 years ago

Updated by eilbeck on 2008-08-27 19:28 UTC