srynobio
commented
9 years ago Commented by eilbeck on 2008-11-18 21:52 UTC Thanks Chris. I'll get to work on these! --K
Open srynobio opened 9 years ago
srynobio
commented
9 years ago Commented by eilbeck on 2008-11-18 21:52 UTC Thanks Chris. I'll get to work on these! --K
Reported by cmungall on 2008-11-12 13:01 UTC The following triads show terms with >1 asserted is_a parent. Ideally each term should have 1 asserted is_a parent/genus. If there are more then the term is likely compositional and a good candidate for a genus-differentia definition (with the dual is_a parents resurfacing in the inferred graph)
Some of the dual parents below are illegal due to disjointness constraints
SO:0000134-imprinted SO:0000119-regulated SO:0000133-epigenetically_modified SO:0000149-contig SO:0000143-assembly_component SO:0000353-sequence_assembly SO:0000155-plasmid SO:0001038-extrachromosomal_mobile_genetic_element SO:0001235-replicon SO:0000159-deletion SO:0000001-region SO:0001059-sequence_alteration SO:0000235-TF_binding_site SO:0000410-protein_binding_site SO:0005836-regulatory_region SO:0000320-intronic_splice_enhancer SO:0000344-splice_enhancer SO:0000841-spliceosomal_intron_region SO:0000417-polypeptide_domain SO:0001070-structural_region SO:0100021-polypeptide_conserved_region SO:0000427-R_five_prime_LTR_region SO:0000423-R_LTR_region SO:0000850-five_prime_LTR_component SO:0000428-U5_five_prime_LTR_region SO:0000422-U5_LTR_region SO:0000850-five_prime_LTR_component SO:0000429-U3_five_prime_LTR_region SO:0000424-U3_LTR_region SO:0000850-five_prime_LTR_component SO:0000433-non_LTR_retrotransposon_polymeric_tract SO:0000657-repeat_region SO:0000840-repeat_component SO:0000439-inverted_ring_chromosome SO:1000030-chromosomal_inversion SO:1000045-ring_chromosome SO:0000465-inversion_derived_deficiency_plus_duplication SO:1000029-chromosomal_deletion SO:1000038-intrachromosomal_duplication SO:0000473-negatively_autoregulated SO:0000126-transcriptionally_repressed SO:0000471-autoregulated SO:0000475-positively_autoregulated SO:0000125-transcriptionally_induced SO:0000471-autoregulated SO:0000480-tiling_path_clone SO:0000151-clone SO:0000474-tiling_path_fragment SO:0000613-bacterial_RNApol_promoter SO:0000752-gene_group_regulatory_region SO:0001203-RNA_polymerase_promoter SO:0000614-bacterial_terminator SO:0000141-terminator SO:0000752-gene_group_regulatory_region SO:0000667-insertion SO:0000001-region SO:0001059-sequence_alteration SO:0000676-canonical_three_prime_splice_site SO:0000164-three_prime_splice_site SO:0000675-canonical_splice_site SO:0000677-canonical_five_prime_splice_site SO:0000163-five_prime_splice_site SO:0000675-canonical_splice_site SO:0000678-non_canonical_three_prime_splice_site SO:0000164-three_prime_splice_site SO:0000674-non_canonical_splice_site SO:0000679-non_canonical_five_prime_splice_site SO:0000163-five_prime_splice_site SO:0000674-non_canonical_splice_site SO:0001041-viral_sequence SO:0001038-extrachromosomal_mobile_genetic_element SO:0001235-replicon SO:0001092-metal_contact SO:0000409-binding_site SO:0100002-molecular_contact_region SO:0001093-protein_protein_contact SO:0000409-binding_site SO:0100002-molecular_contact_region SO:0001105-ligand_contact SO:0000409-binding_site SO:0100002-molecular_contact_region SO:0100020-DNA_contact SO:0000409-binding_site SO:0100002-molecular_contact_region SO:1000002-substitution SO:0001059-sequence_alteration SO:0001411-biological_region SO:1000029-chromosomal_deletion SO:0000550-aneuploid_chromosome SO:1000028-intrachromosomal_mutation SO:1000036-inversion SO:0000001-region SO:0001059-sequence_alteration SO:1000038-intrachromosomal_duplication SO:1000028-intrachromosomal_mutation SO:1000037-chromosomal_duplication SO:1000041-intrachromosomal_transposition SO:0000453-transposition SO:1000038-intrachromosomal_duplication SO:1000122-mutation_causing_polypeptide_post_translational_processing_change SO:1000117-mutation_affecting_polypeptide_function SO:1000118-mutation_causing_loss_of_function_of_polypeptide SO:1000145-free_ring_duplication SO:1000045-ring_chromosome SO:1000144-free_duplication SO:1000147-deficient_translocation SO:1000029-chromosomal_deletion SO:1000044-chromosomal_translocation SO:1000148-inversion_cum_translocation SO:1000030-chromosomal_inversion SO:1000044-chromosomal_translocation SO:1000155-interchromosomal_transposition SO:0000453-transposition SO:1000031-interchromosomal_mutation SO:1000158-inverted_intrachromosomal_transposition SO:1000030-chromosomal_inversion SO:1000041-intrachromosomal_transposition SO:1000171-deficient_inversion SO:1000029-chromosomal_deletion SO:1000030-chromosomal_inversion SO:1001260-internal_Shine_Dalgarno_sequence SO:0000243-internal_ribosome_entry_site SO:1001268-recoding_stimulatory_region