The-Sequence-Ontology / SO-Ontologies

Collect of SO Ontologies
Creative Commons Attribution 4.0 International
94 stars 37 forks source link

Transposon_CDS/Transposon_pseudogene [sf#299] #299

Open srynobio opened 9 years ago

srynobio commented 9 years ago

Reported by davpabenwo on 2012-02-20 12:19 UTC To allow for the classification of a non-genomic coding/pseudogenic gene structure.

I guess these would have to be child terms of CDS and also child terms of LTR_transposons and other classes that have coding potential.

srynobio commented 9 years ago

Response from @keilbeck

transposable_element_pseudogene SO:0001897 transposable_element_CDS SO:0001896 I think understood your request. You want to annotate the CDS portion of a gene within a transposable element, and likewise for a pseudogene. I made these cross product terms. I'll check them in shortly. If this is not what you want, let me know. --KAren\