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Collect of SO Ontologies
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How to annotate PIRC and RNR genes marked by HGNC with "RNA, cluster"? #564

Open cthoyt opened 2 years ago

cthoyt commented 2 years ago

HGNC marks some genes' locus types as "RNA, cluster". Their definition on https://www.genenames.org/help/symbol-report/ reads:

region containing a cluster of small non-coding RNA genes

HGNC lists 119 genes annotated with this locus type, all of which are either part of the Piwi-interacting RNA clusters (PIRC) group or the Ribosomal 45S RNA clusters (RNR) group.

Since this is a pretty shallow group, maybe somebody has an idea how to separately annotate PIRC genes and RNR genes with existing SO terms. Otherwise, it would be great to mint a new one that could cover these.

| HGNC Identifier | Symbol | URL | Links | |-------------------|----------|--------------------------------------------------------------------|-------------------------------------------------------------------------------------------| | 37505 | PIRC1 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37505 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37506 | PIRC2 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37506 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37507 | PIRC3 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37507 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37508 | PIRC4 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37508 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37509 | PIRC5 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37509 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37510 | PIRC6 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37510 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37511 | PIRC7 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37511 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37512 | PIRC8 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37512 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37513 | PIRC9 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37513 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37514 | PIRC10 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37514 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37515 | PIRC11 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37515 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37516 | PIRC12 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37516 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37517 | PIRC13 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37517 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37518 | PIRC14 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37518 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37519 | PIRC15 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37519 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37520 | PIRC16 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37520 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37521 | PIRC17 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37521 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37522 | PIRC18 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37522 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37523 | PIRC19 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37523 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37524 | PIRC20 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37524 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37525 | PIRC21 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37525 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37526 | PIRC22 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37526 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37527 | PIRC23 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37527 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37528 | PIRC24 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37528 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37529 | PIRC25 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37529 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37530 | PIRC26 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37530 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37531 | PIRC27 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37531 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37532 | PIRC28 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37532 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37533 | PIRC29 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37533 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37534 | PIRC30 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37534 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37535 | PIRC31 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37535 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37536 | PIRC32 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37536 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37537 | PIRC33 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37537 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37538 | PIRC34 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37538 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37539 | PIRC35 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37539 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37540 | PIRC36 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37540 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37541 | PIRC37 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37541 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37542 | PIRC38 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37542 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37543 | PIRC39 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37543 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37544 | PIRC40 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37544 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37545 | PIRC41 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37545 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37546 | PIRC42 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37546 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37547 | PIRC43 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37547 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37548 | PIRC44 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37548 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37549 | PIRC45 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37549 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37550 | PIRC46 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37550 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37551 | PIRC47 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37551 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37552 | PIRC48 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37552 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37553 | PIRC49 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37553 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37554 | PIRC50 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37554 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37555 | PIRC51 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37555 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37556 | PIRC52 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37556 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37557 | PIRC53 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37557 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37558 | PIRC54 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37558 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37559 | PIRC55 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37559 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37560 | PIRC56 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37560 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37561 | PIRC57 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37561 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37562 | PIRC58 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37562 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37563 | PIRC59 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37563 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37564 | PIRC60 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37564 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37565 | PIRC61 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37565 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37566 | PIRC62 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37566 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37567 | PIRC63 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37567 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37568 | PIRC64 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37568 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37569 | PIRC65 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37569 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37570 | PIRC66 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37570 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37571 | PIRC67 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37571 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37572 | PIRC68 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37572 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37573 | PIRC69 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37573 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37574 | PIRC70 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37574 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37575 | PIRC71 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37575 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37576 | PIRC72 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37576 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37577 | PIRC73 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37577 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37578 | PIRC74 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37578 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37579 | PIRC75 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37579 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37580 | PIRC76 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37580 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37581 | PIRC77 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37581 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37582 | PIRC78 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37582 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37583 | PIRC79 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37583 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37584 | PIRC80 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37584 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37585 | PIRC81 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37585 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37586 | PIRC82 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37586 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37587 | PIRC83 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37587 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37588 | PIRC84 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37588 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37589 | PIRC85 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37589 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37590 | PIRC86 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37590 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37591 | PIRC87 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37591 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37592 | PIRC88 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37592 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37593 | PIRC89 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37593 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37594 | PIRC90 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37594 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37595 | PIRC91 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37595 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37596 | PIRC92 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37596 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37597 | PIRC93 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37597 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37598 | PIRC94 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37598 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37599 | PIRC95 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37599 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37600 | PIRC96 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37600 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37601 | PIRC97 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37601 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37602 | PIRC98 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37602 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37603 | PIRC99 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37603 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37604 | PIRC100 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37604 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37605 | PIRC101 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37605 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37606 | PIRC102 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37606 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37607 | PIRC103 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37607 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37608 | PIRC104 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37608 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37609 | PIRC105 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37609 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37610 | PIRC106 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37610 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37611 | PIRC107 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37611 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37612 | PIRC108 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37612 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37613 | PIRC109 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37613 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37614 | PIRC110 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37614 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37615 | PIRC111 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37615 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37616 | PIRC112 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37616 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37617 | PIRC113 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37617 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 37618 | PIRC114 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/37618 | https://www.ncbi.nlm.nih.gov/pubmed/17881367 | | 10082 | RNR1 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/10082 | https://www.ncbi.nlm.nih.gov/pubmed/11350117 | | 10083 | RNR2 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/10083 | https://www.ncbi.nlm.nih.gov/pubmed/11350117 | | 10084 | RNR3 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/10084 | https://www.ncbi.nlm.nih.gov/pubmed/11350117, https://www.ncbi.nlm.nih.gov/pubmed/6954460 | | 10085 | RNR4 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/10085 | https://www.ncbi.nlm.nih.gov/pubmed/11350117 | | 10086 | RNR5 | https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/10086 | https://www.ncbi.nlm.nih.gov/pubmed/11350117 |
cthoyt commented 1 year ago

@egchristensen any chance you can take a look at this?