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TheBrownLab / PhyloFisher

PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
MIT License
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Nucleotide alignments #101

Closed snacktavish closed 12 months ago

snacktavish commented 1 year ago

Hi PhyloFisher team, Thanks for sharing your data! Do you have available anywhere the nucleotide sequences that went into generating the orthologs sequences provided here? https://thebrownlab.github.io/phylofisher-pages/getting-started/download-provided-dataset/ We (me and @JD-X1 ) are interested in comparing mappings an alignments between amino acid and nucleotide data, and it would be valuable comparison dataset for us. Thanks,

atice commented 1 year ago

Hi @snacktavish

We do have the corresponding nucleotide sequences. They are the subject of new paper we are preparing to submit describing new functionality we are adding to PhyloFisher. I don't see a reason we can't go ahead and pass them along, but we want to check with the PI on the project just to confirm. He will be back early next week from a conference. Could we get back to you then with an answer?

Alex

snacktavish commented 1 year ago

Sure! That would be great. Thank you!

snacktavish commented 1 year ago

Hi, just checking back in on this!