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TheBrownLab / PhyloFisher

PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
MIT License
31 stars 15 forks source link

fast_site_remover.py with nucleic acid sequences #107

Open aguang opened 11 months ago

aguang commented 11 months ago

Hi, thanks for this great tool. I used fast_site_remover.py to identify my fastest evolving sites for a project I am working on, however I had nucleic acid sequences rather than amino acid sequences. I ended up modifying the script to use nucleic acid sequences and also to print out the indices of the fastest evolving sites both through optional arguments. Would these modifications be of interest to you? If so I can open a pull request with them.

atice commented 11 months ago

Hi @aguang

these sound like great additions to the code! Feel free to open a pull request and when @robert-ervin-jones and I have time we can review your edits and see about making them permanent additions and documenting the new functionality. Thanks for asking!

Alex

atice commented 10 months ago

Hi @aguang

Just wanted to touch base with you on this again. Let us know if you are still interested in providing us with the modifications you have made to our code.

Alex

aguang commented 10 months ago

I just made a pull request for it, I think it should have the file modifications