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TheBrownLab / PhyloFisher

PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
MIT License
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heterotachy.py handling of taxon names #116

Open atice opened 8 months ago

atice commented 8 months ago

Substitute taxon names with temporary IDs as in fast_site_remover.py to facilitate use on non-PhyloFisher derived datasets.

michelleleger commented 6 months ago

For what it's worth, renaming the taxa in Phylip format, or converting the file to strict Phylip, didn't work for me - what ended up working was changing the input to fasta format (in PhyloFisher v.1.1.1)

atice commented 6 months ago

Thanks for this bit of information Michelle!