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TheDeanLab / navigate

navigate - open source light-sheet microscope controls
https://thedeanlab.github.io/navigate/
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Software glitch and crush (Expansion Microscope) #1025

Open JinlongL opened 1 day ago

JinlongL commented 1 day ago 
(navigate) C:\Users\Dean-Lab>navigate
Exception in thread live Data:
Traceback (most recent call last):
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\threading.py", line 973, in _bootstrap_inner
    self.run()
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\threading.py", line 910, in run
    self._target(*self._args, **self._kwargs)
  File "C:\Users\Dean-Lab\Documents\navigate\src\navigate\model\model.py", line 951, in run_data_process
    self.show_img_pipe.send("stop")
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 211, in send
    self._send_bytes(_ForkingPickler.dumps(obj))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 285, in _send_bytes
    ov, err = _winapi.WriteFile(self._handle, buf, overlapped=True)
BrokenPipeError: [WinError 232] The pipe is being closed
Exception inside ObjectInSubprocess: Traceback (most recent call last):
  File "C:\Users\Dean-Lab\Documents\navigate\src\navigate\model\concurrency\concurrency_tools.py", line 529, in _child_loop
    child_pipe.send((result, printed_output.getvalue()))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 211, in send
    self._send_bytes(_ForkingPickler.dumps(obj))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 285, in _send_bytes
    ov, err = _winapi.WriteFile(self._handle, buf, overlapped=True)
BrokenPipeError: [WinError 232] The pipe is being closed

Process Model:
Traceback (most recent call last):
  File "C:\Users\Dean-Lab\Documents\navigate\src\navigate\model\concurrency\concurrency_tools.py", line 529, in _child_loop
    child_pipe.send((result, printed_output.getvalue()))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 211, in send
    self._send_bytes(_ForkingPickler.dumps(obj))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 285, in _send_bytes
    ov, err = _winapi.WriteFile(self._handle, buf, overlapped=True)
BrokenPipeError: [WinError 232] The pipe is being closed

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\process.py", line 315, in _bootstrap
    self.run()
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\process.py", line 108, in run
    self._target(*self._args, **self._kwargs)
  File "C:\Users\Dean-Lab\Documents\navigate\src\navigate\model\concurrency\concurrency_tools.py", line 533, in _child_loop
    child_pipe.send((Exception(str(e)), printed_output.getvalue()))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 211, in send
    self._send_bytes(_ForkingPickler.dumps(obj))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 285, in _send_bytes
    ov, err = _winapi.WriteFile(self._handle, buf, overlapped=True)
BrokenPipeError: [WinError 232] The pipe is being closed

(navigate) C:\Users\Dean-Lab>C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<3>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<4>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<5>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<6>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<7>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<8>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<9>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<1>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<2>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<3CB>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
navigate
Exception in thread live Data:
Traceback (most recent call last):
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\threading.py", line 973, in _bootstrap_inner
    self.run()
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\threading.py", line 910, in run
    self._target(*self._args, **self._kwargs)
  File "C:\Users\Dean-Lab\Documents\navigate\src\navigate\model\model.py", line 951, in run_data_process
    self.show_img_pipe.send("stop")
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 211, in send
    self._send_bytes(_ForkingPickler.dumps(obj))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 285, in _send_bytes
    ov, err = _winapi.WriteFile(self._handle, buf, overlapped=True)
BrokenPipeError: [WinError 232] The pipe is being closed
Exception inside ObjectInSubprocess: Traceback (most recent call last):
  File "C:\Users\Dean-Lab\Documents\navigate\src\navigate\model\concurrency\concurrency_tools.py", line 529, in _child_loop
    child_pipe.send((result, printed_output.getvalue()))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 211, in send
    self._send_bytes(_ForkingPickler.dumps(obj))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 285, in _send_bytes
    ov, err = _winapi.WriteFile(self._handle, buf, overlapped=True)
BrokenPipeError: [WinError 232] The pipe is being closed

Process Model:
Traceback (most recent call last):
  File "C:\Users\Dean-Lab\Documents\navigate\src\navigate\model\concurrency\concurrency_tools.py", line 529, in _child_loop
    child_pipe.send((result, printed_output.getvalue()))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 211, in send
    self._send_bytes(_ForkingPickler.dumps(obj))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 285, in _send_bytes
    ov, err = _winapi.WriteFile(self._handle, buf, overlapped=True)
BrokenPipeError: [WinError 232] The pipe is being closed

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\process.py", line 315, in _bootstrap
    self.run()
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\process.py", line 108, in run
    self._target(*self._args, **self._kwargs)
  File "C:\Users\Dean-Lab\Documents\navigate\src\navigate\model\concurrency\concurrency_tools.py", line 533, in _child_loop
    child_pipe.send((Exception(str(e)), printed_output.getvalue()))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 211, in send
    self._send_bytes(_ForkingPickler.dumps(obj))
  File "C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\multiprocessing\connection.py", line 285, in _send_bytes
    ov, err = _winapi.WriteFile(self._handle, buf, overlapped=True)
BrokenPipeError: [WinError 232] The pipe is being closed
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<3>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<4>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<5>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<6>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<7>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<8>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<9>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<1>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(
C:\Users\Dean-Lab\miniconda3\envs\navigate\lib\site-packages\nidaqmx\task.py:102: ResourceWarning: Task of name "_unnamedTask<2>" was not explicitly closed before it was destructed. Resources on the task device may still be reserved.
  warnings.warn(

model_debug.log