Closed annie-xd-wang closed 2 weeks ago
The parameter "multiposition_count" is removed from experiment.yml, accordingly, the parameter for LoopByCount needs to be set as "positions". Please update the feature pipeline as follows: [{"name": PrepareNextChannel,},({"name": MoveToNextPositionInMultiPositionTable,},{"name": ZStackAcquisition,"args": (True,True,),},{"name": WaitToContinue,},{"name": LoopByCount,"args": ("positions",),},),]
I'm using the correct feature syntax now with "positions"
but still get the same error:
I suspect the Photometrics is causing problems as I had similar issues with the AO feature when used in a feature list. The camera would just hang at the end. Does everything work alright with the Hamamatsu?
Annie's new LoopByCount fix seems to have solved the problem. I tested WaitForExternalTrigger and it works as well.
I'm getting a frame timeout error when using the Photometrics camera on this PR. This is just running a normal multiposition feature list:
[{"name": PrepareNextChannel,},({"name": MoveToNextPositionInMultiPositionTable,},{"name": ZStackAcquisition,"args": (True,True,),},{"name": WaitToContinue,},{"name": LoopByCount,"args": ("experiment.MicroscopeState.multiposition_count",),},),]
The feature will run and I'll get to the final position, and the camera will hang throwing several frame timeout errors:
frame timeout. Verify timeout exceeds exposure time. If applicable, check external trigger source.
I've seen this happen occasionally with the Photometrics camera, but I did compare to develop and everything was fine, so I suspect it might be something with this PR.
Here is the
model_debug
when I recreated the error:model_debug.log