Is the reconstructed sequence a line or a loop?

TheEvergreenStateCollege / bioinformatics

Plant genome sequencing

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Is the reconstructed sequence a line or a loop? #1

Closed learner-long-life closed 7 months ago

learner-long-life commented 7 months ago

From the Pevzner paper, it looks like they are applying Eulerian cycle-finding from linear fragments to construct a consistent linear sequence (DNA genome, or mRNA sequence).

We can adapt our approach to either. This question we can delay until later when we get results to interpret.

AbyssalRemark commented 7 months ago

According to Nancy we definitely have a line. Only bacteria do circles. With very minima exceptions.