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TheJacksonLaboratory / HPOworkbench

Human Phenotype Ontology Workbench
http://hpo-workbench.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
18 stars 9 forks source link

The GUI of the application is crashing #57

Closed eazy92 closed 4 years ago

eazy92 commented 4 years ago

Hello there,

I am interested in using the HPO workbench, however when i run the application, i get the following error message: Exception in thread "JavaFX Application Thread" java.lang.RuntimeException: java.lang.reflect.InvocationTargetException at javafx.fxml/javafx.fxml.FXMLLoader$MethodHandler.invoke(FXMLLoader.java:1787) at javafx.fxml/javafx.fxml.FXMLLoader$ControllerMethodEventHandler.handle(FXMLLoader.java:1670) at javafx.base/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:86) at javafx.base/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238) at javafx.base/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191) at javafx.base/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59) at javafx.base/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58) at javafx.base/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at javafx.base/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at javafx.base/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at javafx.base/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at javafx.base/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at javafx.base/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at javafx.base/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at javafx.base/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at javafx.base/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at javafx.base/com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74) at javafx.base/com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:49) at javafx.base/javafx.event.Event.fireEvent(Event.java:198) at javafx.graphics/javafx.scene.Node.fireEvent(Node.java:8865) at javafx.controls/javafx.scene.control.Button.fire(Button.java:200) at javafx.controls/com.sun.javafx.scene.control.behavior.ButtonBehavior.mouseReleased(ButtonBehavior.java:206) at javafx.controls/com.sun.javafx.scene.control.inputmap.InputMap.handle(InputMap.java:274) at javafx.base/com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(CompositeEventHandler.java:218)

This is the java version that I am using: openjdk version "11.0.7" 2020-04-14 OpenJDK Runtime Environment (build 11.0.7+10-post-Ubuntu-2ubuntu218.04) OpenJDK 64-Bit Server VM (build 11.0.7+10-post-Ubuntu-2ubuntu218.04, mixed mode, sharing)

I resolved the issues with JavaFX by adding the following dependencies: `

org.openjfx 
        <artifactId>javafx-controls</artifactId>
        <version>11</version>
    </dependency>

    <dependency>
        <groupId>org.openjfx</groupId>
        <artifactId>javafx-fxml</artifactId>
        <version>11</version>
    </dependency>

    <dependency>
        <groupId>org.openjfx</groupId>
        <artifactId>javafx-web</artifactId>
        <version>11</version>
    </dependency>`

Thanks for any suggestions !

pnrobinson commented 4 years ago

At the moment, the Workbench tool has only been tested with Oracle Java 8. We are starting to update some of our JavaFX tooling to Java 11/Java 14, but have not yet worked on this app. Are you saying that the error still occured despite updating the pom file?

eazy92 commented 4 years ago

Thanks for the quick response. Yes, the error is still occuring, although i updated the pom.xml. I will try to run the application on a Oracle Java 8 version.

pnrobinson commented 4 years ago

OK, sorry -- I have made this repo public in case it is useful but since we never published this as an article I can only work on this as time allows. It is a little tricky to port some of the FX code to Java 11 it seems, but I hope to get to that this year.